rs27978625 SNP Detail

Summary

• ID
  rs27978625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75938387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGATCG CTGGCAGCCC
  TCCTTGGTGA TCTCCTCCGA TTGACCCTCC TCCGCATGCC CTGAGTTGCC TGGTGTGGTT
  GAGTGCTGTG AAGCCACTCT TTCTGCACTT TGCTTTGTGG CTAGGGGAAG TGGCCAGGAA
  GGAGGCCATC TTGTGCTGTG ACTACCAGGG ACAGAAATAC TTTCTTGAGC TAATCAGTGT
  R
  AATCGTCCCA GCACCGGTCC ACAAAGGGAG AGTAGGATTC CTCACTCCCG ATTGCTCCTG
  AAGAACCCCA GTAGATTACC ACAGCAACAT TGGTGGGTGA TCCTGAGGCC TGAAGCTGCT
  TCACCACTCG ATTTTACCCC GGGAATGGAC GTGATCTCTT AAATCTAGAC TAGGTGATGA
  GGATGCCCTT TGACCTTCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38107155	NES09256411	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978625					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107155	NES09256411	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75938387 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559651	regulatory region 559651	1611 bp proximal