rs27978626 SNP Detail

Summary

• ID
  rs27978626
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75938064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGTGGGC AGTTCTGAAA GCAGCACTCC AGAGAGTCAG
  TCTGCGGAGC ACGGAGACAA CAAGCTGCTT CCTTCAGGCA CCAAGGTTCC AGGCTAGCCC
  K
  GGCTGCAGAG GAGCCTCTGA GAGAGTATCT GTCAGAGGCA GAGGAACAGG GGGATAATGA
  TGCTCTGGTG GGTGACACTG TGAGCTGCCA GCCCCCATC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38107156	NES09256410	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T		T	T	G	T		T	T	T		T
ss45264195	mCV23800401	ABI	CRAMUS_MOUSE	f	SNP		T					G		T
ss146770354	ENSMUSSNP2214599	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320352695	CHEV_2_75945777	CHEVERUD	SCREENING_POP	f	SNP												G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27978626					SNP	T	T	G	T	T	T	G	T	T	G	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107156	NES09256410	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75938064 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559651	regulatory region 559651	1934 bp proximal