rs27978627 SNP Detail

Summary

• ID
  rs27978627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75938015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATGATCCT AGAAATAAGC TGGGGCAGGG TGGGGGAGGA
  CTGGAAAGCC AGGGTGGGCA GTTCTGAAAG CAGCACTCCA GAGAGTCAGT CTGCGGAGCA
  Y
  GGAGACAACA AGCTGCTTCC TTCAGGCACC AAGGTTCCAG GCTAGCCCGG GCTGCAGAGG
  AGCCTCTGAG AGAGTATCTG TCAGAGGCAG AGGAACAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38107157	NES09256409	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T		C	T	C	T		T	T	T		T
ss45321591	mCV23800391	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss146770351	ENSMUSSNP2214855	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320352694	CHEV_2_75945728	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27978627					SNP	T	T	C	T	T	T	C	C	T	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107157	NES09256409	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75938015 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559651	regulatory region 559651	1983 bp proximal