rs27978688 SNP Detail

Summary

• ID
  rs27978688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75931258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAACAGAGC AAGATCTGTA AAAGCATATG AATCAGCAGA
  AATGCTGGGT TGTAGCGGAG TTACTCTCCG AGAGGAGCAA TATGTGGAAG ATGCAGTGAT
  Y
  GGCACCGTGC TGTTCTCTAG GAAGGAGAGG AAATGCATTT GTAAAGTCTG GCTGCCTGAC
  ACTGCCTAAC CAAATAGCTG GGCTCCACAC TCTTATCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38107219	NES09256643	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	T	C		C	C	C	C		C
ss45332827	mCV23800047	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T	C
ss146770244	ENSMUSSNP2972998	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						C
ss320352653	CHEV_2_75938971	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27978688					SNP	C	C	C	T	C	C	C	T	C	T	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107219	NES09256643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75931258 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559649	regulatory region 559649	474 bp distal
Rr559650	regulatory region 559650	977 bp proximal