rs27978694 SNP Detail

Summary

• ID
  rs27978694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75930369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCGTTCT TCAAAGGCAG
  CCCCAGCGTT TTGCGGAGCT GTCTGACAAG CTTGAGCCCT GCTGGGTGGG CGGCCAGCTG
  CTCCTGCAGG AGCCATCCCA GAGCTAGATG TTCCCAGAAC CCTCTCTGTC AGTGGAAAGG
  GCAGAGGTGA ATTATGATAT ATGTTGGGAA ACGTGCCCAG TAGCAGGGGG AATGGGATTA
  R
  TCAGCTCCAG AATTGTTTGG GATTTGCGCT TTGGATGGAA AAATTATTAT CATCCAACAA
  AACTTTCCCT TGAAGTTGAC ACTGTAATGC TGGCTGCTGA GGAGGTCCAC CCGTGGCAAC
  AGTGGGGCTG GATGACTTTG TAGACTGTGA AAACTAACAA AGATAGGCAC GCTCTCATGC
  ATGCACATGC ACACACATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38107225	NES09256717	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978694					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107225	NES09256717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75930369 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559648	regulatory region 559648	1151 bp distal
Rr559649	regulatory region 559649	within coordinates
Rr559650	regulatory region 559650	1866 bp proximal