rs27978698 SNP Detail

Summary

• ID
  rs27978698
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75930113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTTGTC CAGCTTCTTA
  GAGAATTATG GCGAACTCAC TTCAGAGAGA CCACTGGTGA CTTGGATGAC ACTTACAGTA
  GAAACAAACA TTCCTGCAGT GTTTAAAAGG CAGGGACACG TTTAAGACCC CTTTTTCTCT
  TTCTTTCCTT TTTTAAAAAA TTGTAGCAAC ATGATCACGG AACACACCCC TCCCACTCCA
  K
  TCTCCTTCTT TTCTGAATTT TTAGTTTTTC TAGTTGGGGG TGAAGGGAAG AGTACAAAGC
  GTTCTTCAAA GGCAGCCCCA GCGTTTTGCG GAGCTGTCTG ACAAGCTTGA GCCCTGCTGG
  GTGGGCGGCC AGCTGCTCCT GCAGGAGCCA TCCCAGAGCT AGATGTTCCC AGAACCCTCT
  CTGTCAGTGG AAAGGGCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38107229	NES09256713	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978698					SNP	G	G	G	G	G	G	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107229	NES09256713	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75930113 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559648	regulatory region 559648	895 bp distal
Rr559649	regulatory region 559649	within coordinates