rs27978701 SNP Detail

Summary

• ID
  rs27978701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75929833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCGTTGTA ATTGCCACCC
  GGTACCTATA TGTTAGGATG TAAGCATCCC GTCTTGCATG CTCAGGAAAT GTCTCTGGTT
  ATAACAGAAG CAGTGGGGAG GCCCGAGGGG GACTGAAAGT CACCATCTGA AAGCTGTGCG
  CATACTGAGA TGGAAGGACA GCAACAGTAC GCTATGCTCC TTTATCCTTT CTAGGGGAAA
  Y
  GGTCTTTCTT AGCTACCTGT GCCCACTACT ACTCTGTGCA GACAATGCCT TTCTCAACAC
  TGGACTGATA GACCCTTCCT TGGCTTGTCC AGCTTCTTAG AGAATTATGG CGAACTCACT
  TCAGAGAGAC CACTGGTGAC TTGGATGACA CTTACAGTAG AAACAAACAT TCCTGCAGTG
  TTTAAAAGGC AGGGACACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38107232	NES09256710	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978701					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107232	NES09256710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75929833 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	1991 bp distal
Rr559648	regulatory region 559648	615 bp distal
Rr559649	regulatory region 559649	107 bp proximal