rs27978706 SNP Detail

Summary

• ID
  rs27978706
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75928921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAAGAAA CATGTGGCTA
  TTTATACACA CCTTTTATAG AATGTCCGTT TATCTATTTC AAAGTCTAAC ATTGTTTATT
  CAGGAAACGA TTTCCAACAG TGTCAAGCCC CCACTTGTAA ATTCTTCTCC GTCTCCTTGT
  CTCCAGCATG GCCCCCTTGA CCTTTCCCTT CTGACTTTCG AATCCAGAGA CTCTGGCGGC
  K
  GCAGGATGTG GTCAGTGTCG GGGGCAGTAC TGGATGTAGT TTATCTTGCT CTGTCCACTT
  AGAATATTAG CATCACGCTG GGAGGAGGAG AAGTTCGGTC CTATCTAAAC ATCTTTGAGA
  TTCATCTCTG CAGCCAGAGA GAATTCTTTG GTTACAAGCA ACTGCCTTTG CTACCCCCAG
  GTTAACTGTC CACACACAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38107237	NES09256705	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978706					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107237	NES09256705	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75928921 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	1079 bp distal
Rr559648	regulatory region 559648	within coordinates
Rr559649	regulatory region 559649	1019 bp proximal