rs27981827 SNP Detail

Summary

• ID
  rs27981827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76639007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTCCAT CTCACACCAT
  CCCTCTTAAG TGCTGACAGG TTCAGAAATA GCCGTACAGG TGTTTGGAGC AGTGCCTCTC
  CCTTCAGTTT CCAGTTGGCA TGTATATCAT CTTCAGAGAT CTCAGTTTCA AAGCGGGCCG
  TCTCGGTCTC CATCACCTCC ACGCTGTACA GGGGTCGCAC CAGTTTAATT TCCCGATCTG
  R
  AAAAATGAAG GGTCATCATG TGTCATTAGT CTCTGGCAGA AATGACTCCC ATGGCTTCTA
  GGAGGAGACT CATGGAAATT TCCTCACCTT CAATGTCCAG CTTCCCAGAG GTCTGGTCTG
  TCCCACAGTC ACAGGTATAT TGGCCGATAT CTGATTTCAA GGCCTTCTTC AGGATCAGCA
  TGCGTTTCTT GCCGTCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38104051	NES09265802	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27981827					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104051	NES09265802	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76639007 () rs orientation: forward

Symbol	Name	Function Class
Rr50481	regulatory region 50481	994 bp proximal
Tssr543	transcription start site region 543	1316 bp upstream
Tssr24757	transcription start site region 24757	1279 bp upstream
Tssr24758	transcription start site region 24758	1264 bp upstream
Tssr24759	transcription start site region 24759	1233 bp upstream
Tssr24760	transcription start site region 24760	1195 bp upstream
Tssr24761	transcription start site region 24761	344 bp downstream
Ttn	titin	within coordinates