rs27982044 SNP Detail

Summary

• ID
  rs27982044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76585042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGACATT AACATGGTTG
  GCTTTCATCC AAGACTTAGA GGGTAGATCC CGCTTCTCCA CGATATATCC TGTTAATTTA
  TGGCCACCAT CGTATTTAGG TTCTGTCCAG ATGAGAGTCA CTGAATTCCT TGTTACGCTG
  ATAACCTCAG GTTTTCCAGG AGGATCTAAA ACAGAAAAGA AAACCCATCA AACAAACCAC
  Y
  AATGCTTGCT TCATGTAGCA TAGCACACTC CCTCAGGCTT TGCTTTAGTA ATGACTTACC
  AATTGGATCA AGTGCCACAA CTGGCTCTGA TGGCAGGCTT GGCTTGCCCA CTCCAGCTAG
  ATTGATAGCC ATAACTCTGA ATTCATATTC AAGACCTTCA GTTAATCCTG TCACTTTAAA
  ATCTTTCATC CTTATAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss38104270	NES09268194	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs27982044					SNP	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104270	NES09268194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76585042 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr24731	transcription start site region 24731	799 bp upstream
Tssr24732	transcription start site region 24732	646 bp upstream
Tssr24733	transcription start site region 24733	1260 bp downstream
Ttn	titin	within coordinates