rs27982048 SNP Detail

Summary

• ID
  rs27982048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76583764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTTTATA TAAAATATCA
  GAAGGCTCAA ACGAGCAGTG TTGGAGAAGA TCACAGGTAC TAACATGCAA CATCTTTCAT
  CAGAACAGGA TTCGAGGCGT CACTGGGAGG ACCAATCCCG GCTCTGTTTT CTGCACTGAC
  ACGGAACTCA TAGGTATTTC CTTCTTGCAG TCCAGTTACT TTGCACCTGA GATCGGAAAC
  Y
  GGTGTTTTGG TTGCTCTCAC CCACCGCAGG CCTTTCTTTT CTCTCCTTTC TACATGATAT
  CCTGTGATCT CGCTGCCACC ATCATCAGTT GGCCTCTTCC AGCTGACAGT GGCAGTGTTC
  TTGGTGACAT TTGAGATCTC GGGTTTTCCA GGAGGGCCAG GAGGACCTAC AAAAGAAGCA
  GATTTGTGGT AAATTCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss38104274	NES09268190	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs27982048					SNP	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104274	NES09268190	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76583764 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr24730	transcription start site region 24730	921 bp upstream
Tssr24731	transcription start site region 24731	468 bp downstream
Tssr24732	transcription start site region 24732	628 bp downstream
Ttn	titin	within coordinates