rs27982049 SNP Detail

Summary

• ID
  rs27982049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76583595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTACCACA TAGCCAGTGA
  TTTCAAGCCC ACCATCATAA TGAGGCTTGC CCCATGCTAA AGAAGCCGAT TTCTTGGTGG
  TATCAGTGAC ATGTGCATTT GAAGGTGGTC CTGGGGGATC TGAACAAGAG AAACAAAGAT
  AAAAGCATAT GTTAGGAGTT TTGCTTTGGG TACTTTATAT AAAATATCAG AAGGCTCAAA
  Y
  GAGCAGTGTT GGAGAAGATC ACAGGTACTA ACATGCAACA TCTTTCATCA GAACAGGATT
  CGAGGCGTCA CTGGGAGGAC CAATCCCGGC TCTGTTTTCT GCACTGACAC GGAACTCATA
  GGTATTTCCT TCTTGCAGTC CAGTTACTTT GCACCTGAGA TCGGAAACTG GTGTTTTGGT
  TGCTCTCACC CACCGCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss38104275	NES09268189	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs27982049					SNP	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104275	NES09268189	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76583595 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr24730	transcription start site region 24730	752 bp upstream
Tssr24731	transcription start site region 24731	637 bp downstream
Tssr24732	transcription start site region 24732	797 bp downstream
Ttn	titin	within coordinates