rs27982053 SNP Detail

Summary

• ID
  rs27982053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76582666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTTTCA CTGTTGAGAT
  GTGGGTCCAC TGGTCAGACC CTTTTCTCTG GGCTTCAATC ACATAGCCAG TGATCTTGCT
  CCCACCATCA TGCCTTGGCT TAGGCCACGC CAGGCTGACT GTGTTCTTGG TAATGTCCAT
  AATGTTAAGG CTATCTGGGG GTAACGGTGC CTCAGAGGCT CTCACAGGTT CTGTGGTTTC
  Y
  GTTGGCTCAC CAACCCCATA TTCATTTTCT GCCATCACTC TGAAGAAATA TTCACAGCCT
  TCTGTCAAGC CAGTCACTTT ATATGTACAT TTATGGCACT TAGTAGTGAC TGTGGAGTAG
  GATTTCCTGG TTGCTTCACG TTTCTCCACA ATATAATTTG TTATACGTGA GCCCCCATCT
  ATCAGAGGTA GGTCCCAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss38104279	NES09268185	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs27982053					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104279	NES09268185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76582666 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr24728	transcription start site region 24728	1817 bp upstream
Tssr24729	transcription start site region 24729	1727 bp upstream
Tssr24730	transcription start site region 24730	165 bp downstream
Tssr24731	transcription start site region 24731	1566 bp downstream
Tssr24732	transcription start site region 24732	1726 bp downstream
Ttn	titin	within coordinates