rs27982054 SNP Detail

Summary

• ID
  rs27982054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76582567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGCTCT CTCTAGGGGC
  ACTCCTGCCT GCACTGTTTA CCGCCATCAC TTGGAAGGTA TATTCCTCTC CTTCGGTTAG
  GTTCCTCACC ACACATTCTA ACCCTTTCAC TGTTGAGATG TGGGTCCACT GGTCAGACCC
  TTTTCTCTGG GCTTCAATCA CATAGCCAGT GATCTTGCTC CCACCATCAT GCCTTGGCTT
  R
  GGCCACGCCA GGCTGACTGT GTTCTTGGTA ATGTCCATAA TGTTAAGGCT ATCTGGGGGT
  AACGGTGCCT CAGAGGCTCT CACAGGTTCT GTGGTTTCCG TTGGCTCACC AACCCCATAT
  TCATTTTCTG CCATCACTCT GAAGAAATAT TCACAGCCTT CTGTCAAGCC AGTCACTTTA
  TATGTACATT TATGGCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss38104280	NES09268184	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs27982054					SNP	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104280	NES09268184	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76582567 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr24728	transcription start site region 24728	1718 bp upstream
Tssr24729	transcription start site region 24729	1628 bp upstream
Tssr24730	transcription start site region 24730	264 bp downstream
Tssr24731	transcription start site region 24731	1665 bp downstream
Tssr24732	transcription start site region 24732	1825 bp downstream
Ttn	titin	within coordinates