rs27982062 SNP Detail

Summary

• ID
  rs27982062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76578717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCCTTTA TGGTTGTTCT TGCAACCGTA GCTGACACGA
  TTTGCCAGGC GGTTGTGGAT GTGTCTCGTT TCTCTACAAT GTAATTATTG ATAGAGCTTC
  Y
  GCCATCATAC TTTGGTGGTT CCCAGGAAAG AGTGACACTG TCTGCTGTCA CTTCATCCAT
  CTTCACTGGT CCTGTTGGGG GCCCTGGCTT GTCAAGAACG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38104288	NES09268176	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27982062					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104288	NES09268176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76578717 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr542	transcription start site region 542	1217 bp upstream
Tssr24723	transcription start site region 24723	1954 bp upstream
Tssr24724	transcription start site region 24724	1299 bp upstream
Tssr24725	transcription start site region 24725	389 bp downstream
Tssr24726	transcription start site region 24726	571 bp downstream
Tssr24727	transcription start site region 24727	1773 bp downstream
Ttn	titin	within coordinates