rs27982066 SNP Detail

Summary

• ID
  rs27982066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76577467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAGTCTT TGGTCACAGC
  TGTAACTTCT GGAGCTTTGG GTGCATCTGG GACTACAAAT GGATTCTTGG CAATCAATGA
  CTCAGATTCA AGAGGTTCAC CAACACCGTA TTTGTTCACA GCCATTATAC GGAAAATATA
  TTCATTGCCC TCAAGAAGCT TCAGGACTTT ACAGCTGAGC GTTTGCACAT TGGCATCAAC
  Y
  AGAGTCCAGA CGAGGCGGCT GGTTTCTCGC CTTTCCACAA TGTAATTTGT GATGTCACTC
  CCACCATCCT GAAGTGGGGG TTTCCAAGCT AGAGTACATT TTTCTGCTGT AACCCCTGAT
  ATAGCAACAG GTCCCTCAGG TGGCCCTGGT CTATCGAGAA CTTTGACATT GATAGTAACT
  GATTTCTCCC CTGCAACGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38104292	NES09268172	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27982066					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104292	NES09268172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76577467 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr542	transcription start site region 542	21 bp downstream
Tssr24719	transcription start site region 24719	1989 bp upstream
Tssr24720	transcription start site region 24720	1525 bp upstream
Tssr24721	transcription start site region 24721	1483 bp upstream
Tssr24722	transcription start site region 24722	1021 bp upstream
Tssr24723	transcription start site region 24723	704 bp upstream
Tssr24724	transcription start site region 24724	49 bp upstream
Tssr24725	transcription start site region 24725	1639 bp downstream
Tssr24726	transcription start site region 24726	1821 bp downstream
Ttn	titin	within coordinates