rs27982747 SNP Detail

Summary

• ID
  rs27982747
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74409456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAGAGC GCTGGGCCCG
  GCCAATGCCT TCCCATCAAA CCCCGCGCTC CTGCCGCCAG CCAATGGGCG CTGCAGCCGG
  CGCGCGCCGC TCCCCCATCA CGTGATCCGG CCGGCCCAGC CGTTGGTGCC TCAGAGCGGC
  GGGTGTGGCA GGAGGATTTA GGCTGAGTAT CCTCCGCGCT AGTGTAGGCT GTCGGTCCTC
  S
  GGGCACCACA GGGTAGGGCG GTTCCGACTG ACTCTTACTA GTTCTGCCTC CTTTTCTCAT
  GAACAACTCC CACGCCCCAG TCTCGCCAAG AAAAGAAACT GATCCTGATT GTCCCAGACC
  TTCTGAGCGA GAGAAGAGTG GGGAGGACAA AGGGGAGGGA CGTTGAAGGT CGAGACCTGT
  GTGTCTGGAA AAGAGAGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38113072	NES09256900	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27982747					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38113072	NES09256900	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74409456 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930445N08Rik	RIKEN cDNA 4930445N08 gene			within coordinates
Cpgi11782	CpG island 11782			within coordinates
Lnpk	lunapark, ER junction formation factor			Intron
				Noncoding-Transcript-Variant
Rr559317	regulatory region 559317			900 bp distal
Rr559318	regulatory region 559318			761 bp distal
Rr559319	regulatory region 559319			175 bp distal
Rr559320	regulatory region 559320			58 bp distal
Rr559321	regulatory region 559321			within coordinates
Tssr18388	transcription start site region 18388			64 bp downstream
Tssr24610	transcription start site region 24610			158 bp upstream
Tssr24611	transcription start site region 24611			295 bp downstream
Tssr24612	transcription start site region 24612			308 bp downstream
Tssr24613	transcription start site region 24613			349 bp downstream