rs27982757 SNP Detail

Summary

• ID
  rs27982757
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74407907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCACCTTT AACAGCATCT CCACATTATA CTACACAATT
  TGGGTTTAAA TGTGATTTGT TCGAAATCGC TTTCAAATGT CCAAATAGGC AACTCTGAAA
  W
  ATCTTACACC AGGTTTATTG CCCAAAAAAA AAAAAAAAAA AAATGGTAAG CACACTTCTA
  AAAGCACTTT TAATATGAGA TGACCACCAC AAAATAAATA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38113082	NES09256882	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27982757					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38113082	NES09256882	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74407907 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930445N08Rik	RIKEN cDNA 4930445N08 gene			1481 bp upstream
Cpgi11782	CpG island 11782			555 bp proximal
Lnpk	lunapark, ER junction formation factor			Intron
				Noncoding-Transcript-Variant
Rr559317	regulatory region 559317			345 bp proximal
Rr559318	regulatory region 559318			650 bp proximal
Rr559319	regulatory region 559319			789 bp proximal
Rr559320	regulatory region 559320			1375 bp proximal
Rr559321	regulatory region 559321			1492 bp proximal
Tssr18388	transcription start site region 18388			1476 bp upstream
Tssr24609	transcription start site region 24609			956 bp upstream
Tssr24610	transcription start site region 24610			1312 bp downstream
Tssr24611	transcription start site region 24611			1844 bp downstream
Tssr24612	transcription start site region 24612			1857 bp downstream
Tssr24613	transcription start site region 24613			1898 bp downstream