rs27982758 SNP Detail

Summary

• ID
  rs27982758
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74407012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAAAGGC TTAACTCTGT
  CCTGACTTAC CCTAGTACCT GATAACATAG TCATTACCCA TAATTGTTTT TCTTGATGTA
  CTTATTGCCA TTTTCTAATC CATCTCACTT TCTTGACTCT AGCATTTCCT TCTGAAGCAT
  AAATCACTCC CTTCCTCAGG CAGCTTGTCC CCAAACAAGT GCAGTCTCTT TCCAGCTCTG
  W
  TATCACAATG GGACTTAGCA TGTATGACCT TAAGGGCTGA GTGCATCTAA ATGTGGGGGG
  TTAAGATTTA TTTTCATGTG TATGAGTATT GTGCTTGCAT GTATGTGCAC CATGTGTGTG
  CCTTGTGCCC AGGGAAGTCA GAAGTGGGTG TTAGAGTTAC AGATGGCTGT GACCCACCAT
  ATGGGTCATC TGAGTGCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss38113083	NES09256960	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27982758					SNP	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38113083	NES09256960	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74407012 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11782	CpG island 11782			1450 bp proximal
Lnpk	lunapark, ER junction formation factor			Intron
				Noncoding-Transcript-Variant
Rr559317	regulatory region 559317			1240 bp proximal
Rr559318	regulatory region 559318			1545 bp proximal
Rr559319	regulatory region 559319			1684 bp proximal
Tssr24609	transcription start site region 24609			61 bp upstream