rs27982759 SNP Detail

Summary

• ID
  rs27982759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74407006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA ACAAGTGCAG TCTCTTTCCA
  R
  CTCTGATATC ACAATGGGAC TTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38113084	NES09256958	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G		G	A	A	G		A	A	G	A
ss45318993	mCV25093491	ABI	CRAMUS_MOUSE	f	SNP		A					G	G
ss146763374	ENSMUSSNP6257821	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27982759					SNP	A	A	A	A	A	G	G	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38113084	NES09256958	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74407006 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11782	CpG island 11782			1456 bp proximal
Lnpk	lunapark, ER junction formation factor			Intron
				Noncoding-Transcript-Variant
Rr559317	regulatory region 559317			1246 bp proximal
Rr559318	regulatory region 559318			1551 bp proximal
Rr559319	regulatory region 559319			1690 bp proximal
Tssr24609	transcription start site region 24609			55 bp upstream