rs27984454 SNP Detail

Summary

• ID
  rs27984454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74071709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCTGCA GTAAAGGATG
  GTGAGGGCGA AATAAAAGCC CCAAGCCCTA ACCTCAGAGT CTCGGGCTTA ACGCCACTCT
  GGTGCCTTTA CATAACGGGT GCTCCCTTCA ACCTCTCCTT CTTTCTTTCT TCTAGTGTTG
  TCTGGGATAC ACATTCTGCC ACGATGACAC AACGCCGAAG AGCGTCAGAA GGCTGGGCTG
  Y
  ATAACCCATC ACTTTGCAGT GAGGATCCCT TTCACGTGCC TGTCTGTGAT GCTGTGTGTT
  CAGGATTGAC CATGGCTCTA CAGAGAGGCC GGGGCCTTTC CACACAGCAA GCTCACCATC
  CCACGATGGT CTTCCCAATC GGTATTTGGA GCGACAACAC CCCCCAAAGT ATAAGGGACT
  AAATACCAGA CAGTTGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38114279	NES09267518	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27984454					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38114279	NES09267518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74071709 () rs orientation: forward

Symbol	Name	Function Class
Gm75169	predicted gene, 75169	within coordinates
Rr559294	regulatory region 559294	1295 bp distal