rs27984467 SNP Detail

Summary

• ID
  rs27984467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74069374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCACCTG GTGGTCTGAA
  TTTGTCCTGG ATCCCACCCA TCTGGCCTCA AGCTCCTTTC TGCTTTAAGC TAAAACTGGA
  GTGTTTGGCG ATAAGAATGA AGGTGAGCAA GTCTTCGAAC ACCCTGATAA CACTGGGAAC
  TCAAAGGTGA CCAGGTCACT CCCTTGCCAA AGGACAGATG TAGCAAGAGA AACTCTGGCC
  Y
  TTGCTTGACA ATATCACTGC CCACGCATTT CACGGTTGTT TCTTTTTTCT TTTTTCTTTT
  TTTTTTAAAG ATTTATTTAT TTATTATATG TAAGTACACT GTAGCTGTCT TCAGACACAC
  CAGAAGAGGG CGTCAGATCT CGTTACGGAT GGTTGTGAGC CAACATGTGG TTGCTGGGAC
  TTGAACACTG GACCTTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38114292	NES09267577	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		C
ss320347138	CHEV_2_74077087	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27984467					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38114292	NES09267577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74069374 () rs orientation: forward

Symbol	Name	Function Class
Gm75169	predicted gene, 75169	within coordinates
Rr559293	regulatory region 559293	182 bp distal
Rr559294	regulatory region 559294	589 bp proximal