rs27985178 SNP Detail

Summary

• ID
  rs27985178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71443077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAAGGGG TTACTTATTT
  TCCACTCGTC CAGCTGCAGT TGGTGAAAAT GTGAAAATGT GGCCTGAGCC TTGTGCTGGA
  GCTTGGGTTG CTATAGAAAC CTTTGACTAG AGGTGAATGG ATCAGGAAGG TTTATTAATG
  AGAATTTCCC CGTACTACCT CTGGGCACAC TCTGCATGAG AAGCTAAGAA AGGCTCATTA
  R
  TTTTTGCATG TGGGAGGGAG GGAGGGAGGG AGGGAGGAAG GGAGGGAGGG GGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGCTCT
  TTGGAAAGAC AGAGGGCAGT GGTTCTCAAG TAATAGTTCC CAGTGTGGCA ACCTCAGCCT
  AAGTCAGGAA ATTGTTACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38123110	NES09285780	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985178					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38123110	NES09285780	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71443077 () rs orientation: forward

Symbol	Name	Function Class
Gm74655	predicted gene, 74655	348 bp upstream
Gm74658	predicted gene, 74658	within coordinates
Rr558784	regulatory region 558784	1604 bp distal
Rr558785	regulatory region 558785	within coordinates
Rr558786	regulatory region 558786	359 bp proximal