rs27985189 SNP Detail

Summary

• ID
  rs27985189
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71441842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAAGGA AGGAAGGAAG
  GAAGGAAGGA GGGAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAGG
  GAGGGAGGGA GGGAGGGAGG GAGGGAAGGA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG
  AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAACC CCTTCAGCAG
  S
  CCAGGACTTC CATGCATCAC TTTTTCTAGT AGCTCTGGGC TCTTCTGGGG TCCTCATCCT
  CAAATATAGG TAGCCCCTAA GCTACAGCAC AGGGGAGCCA AACCATAGTG CATGGCCCCA
  TGGGGCTCGA CAGTGGAAGG AAGTGGTCCA GCTGAATGGA TGTTCACACT CACTGTGGTG
  TGTTCATGTA TGTGTGTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38123121	NES09285808	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985189					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38123121	NES09285808	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71441842 () rs orientation: forward

Symbol	Name	Function Class
Gm74655	predicted gene, 74655	1583 bp upstream
Gm74658	predicted gene, 74658	within coordinates
Rr558784	regulatory region 558784	369 bp distal
Rr558785	regulatory region 558785	1093 bp proximal
Rr558786	regulatory region 558786	1594 bp proximal