rs27985193 SNP Detail

Summary

• ID
  rs27985193
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71439657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAA AACACAGATG GAAGGAGACA
  K
  CCTGTGACAT CACAGGCCAG CGGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss38123125	NES09285921	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		G	G
ss320339013	CHEV_2_71447370	CHEVERUD	SCREENING_POP	f	SNP					G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs27985193					SNP	T	T	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38123125	NES09285921	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71439657 () rs orientation: forward

Symbol	Name	Function Class
Gm74658	predicted gene, 74658	within coordinates
Rr558782	regulatory region 558782	1788 bp distal
Rr558783	regulatory region 558783	252 bp distal
Rr558784	regulatory region 558784	1482 bp proximal