rs27985194 SNP Detail

Summary

• ID
  rs27985194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71439592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTACTGC AAATCACTCT
  CCCTTAATGG TAAAAAGCCT TCCTGTATAG AGAGTACTTA ACAATGAATC AATGCTAGGA
  AGCTGGAAGA TTCCAGGTTC TGAGGAGGTC TGAGATCGAA ATCCAAATTT AGATCATTAG
  AAGGGGAATG AAGTCAGTAA TTTAGTTCAC GTGAATCAGT GTGGATTTCC ACAGCCCAGC
  R
  ATTCTCGAAT CACACATACC ATAATCACCT ATAGGGCTTG TTAAAACACA GATGGAAGGA
  GACATCCTGT GACATCACAG GCCAGCGGTT CACAAAGTTT AGTATGCAAC AGAAACACCT
  GAGTCTTGCT AAGTCCCCGT GGCTCAGCTC TGTCTCCCAT GACCCCCTTG GCCCCCCAAC
  TTTAGCACAG AGTGTGAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss38123126	NES09285920	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs27985194					SNP	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38123126	NES09285920	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71439592 () rs orientation: forward

Symbol	Name	Function Class
Gm74658	predicted gene, 74658	within coordinates
Rr558782	regulatory region 558782	1723 bp distal
Rr558783	regulatory region 558783	187 bp distal
Rr558784	regulatory region 558784	1547 bp proximal