rs27985609 SNP Detail

Summary

• ID
  rs27985609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72430078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTATTA TTAAGCTAGT
  GTACAAGGCA TAGATGCCCA GTGGAAGGGT TGCTTCTGGA ATTGGCATCA GCAGCCATTT
  CATCAACACA CAGAGAAGAT GCATCGTCTG TAACAAGTGG CCATTAAGTC AGAGCACAAA
  GGCAGTCTTT GAATGTCAGG CATCACCCCT TGCTCAGGGG ACAAGGTGGA CAAAGGCCTC
  R
  AGGCAGGTGC CCTCACACTC CATGTTCAGA GAGGTAATTG GAGTCAGGTG GAGAGGCTGC
  TGTGCACACA CTAGGCACAT GGTCCACAAT AGGTACCTTG GTCATTATGG AGTGGATTGT
  GGGAAATGCT CAGAAAAAAA AAAATAGTGC AAAGAGGGCC GGATAATGAG CAGTAACTGG
  AGATGTGGTG ACAAATGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119243	NES09281575	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985609					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119243	NES09281575	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72430078 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	1362 bp distal
Rr558999	regulatory region 558999	995 bp proximal