rs27985611 SNP Detail

Summary

• ID
  rs27985611
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72429363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAAGTA CTGAGATTAA
  AGGTGTATGT CACTATGCTT GGCTTTATAA GAAAACAGTT TAAAAAAATA TAATCTTTTA
  TTAAAGAGCT GAATGGTTCA CCTGTTAACA TCTAAGTTAT ATATCTATCA GTATTTCTCA
  GTGTGATACC CAGCCCATAG AGGCACTGCT GCTAAGAACA GAGAGCTTCC TGGGCCTCGA
  S
  TGACCTGTTA AAACAGCAGT TTTCAACCTG TCGGTCACGA CCCCTCTGGG GTCGCATATC
  AGATATCCTG AATATTAGAT ATGCACATTA CAGTTCATAA CAGTAGCAAG ATTACAGTTG
  TGAAATAAGA AGAAAATAAC TTTATGGTTG GGGGTCACCA CAACACAAGG AACTGTATTA
  AAGGGTCATA GCATTAGGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119245	NES09281609	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985611					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119245	NES09281609	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72429363 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	647 bp distal
Rr558999	regulatory region 558999	1710 bp proximal
Tssr18356	transcription start site region 18356	1471 bp downstream