rs27985612 SNP Detail

Summary

• ID
  rs27985612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72428955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATGGAG CTTCGATGAT
  TATGTTTTAG GAGCAAATAA AATGGGATGG AGTTTGAGAT TTTGTTTAGA CAGGAAAACA
  AATCCATCTC TTCCTTTGCT CAGGTGTCTC CTTGCTTGGC TGGAACATGC CATACTATGT
  TGGGCTGTAT ACTCTGGGCT GCAGAGAAAT TTGCCAAGGC CACACTAGTG CATAAAGTAG
  R
  CATGAGTTAG CCAGATAGAA GTGATATTTC ACTCTTTATT AATATCCTTT GATGCAAAAT
  TAAGAGTGTT GTTAATCTTG TTAACTCATT TATAAGTGCA CTATTTTTTT CTTTCTATTG
  ATACAGGCAT TTAATGTGTG CCCTGACTGG TCTTGAACTC CGTAGACTAG GCTAGCCTCA
  TATTCACAGA GATCTGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119246	NES09281669	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985612					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119246	NES09281669	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72428955 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	239 bp distal
Tssr18356	transcription start site region 18356	1063 bp downstream