rs27985616 SNP Detail

Summary

• ID
  rs27985616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72428242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATCTCAA GAGATAAGCA
  GGGAAGCAAA TTCCCCGGAG AGGGCTGACA ACAGTTTTTA AAATGAAATG TGTATACACC
  AAGCCTGACA AACTCTATTG CCCACCATCT TTGAAACCGT CAGTTTCCGG GGTGACATTT
  GATTCCATGT GTTTGTTTTG GTGAGTGAGA AAGTAACACA TATTTTCTTT GACATCTTGC
  R
  CAATTTCGCA AGTATTCAGG GCACATTCCC TGCTTTGCAT GGAAAATGTA TTTGCGCAGT
  TGTCAGAATG ATGGACAGGG GAGCGAATGG TAGGACAGAG CGTTGATCTT TGCTTGTTAT
  TACATACAAT AGCCTGGTAG GAATCGTGAT GTGTTGGTGA GACAAACTGT GTCCCATTCT
  GGAACATATT AAGTTTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119250	NES09281660	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985616					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119250	NES09281660	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72428242 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	within coordinates
Tssr18356	transcription start site region 18356	350 bp downstream