rs27985708 SNP Detail

Summary

• ID
  rs27985708
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72237079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AAAGATGGTC TTTAAACCTA GTCTGAGTTA AATACCAACA CTTTAAAAAC
  K
  ATTTTTGTCA CACTAGACTT GGGCAGCCTT GTGAGACTAG TTGAGGTTCA           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120038	NES09270517	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985708					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120038	NES09270517	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72237079 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr62487	regulatory region 62487	within coordinates
Tssr18342	transcription start site region 18342	1471 bp downstream
Tssr18343	transcription start site region 18343	1388 bp downstream
Tssr18344	transcription start site region 18344	1023 bp downstream
Tssr18345	transcription start site region 18345	449 bp downstream
Tssr18346	transcription start site region 18346	85 bp downstream