rs27985715 SNP Detail

Summary

• ID
  rs27985715
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72235991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGTTAAAG AAATCCTGAA ACATGTAAAG TTCAGAATGA
  GAATTAGAGC TACAGGTTGT GGTGATGAAT GTCAGTCGGA CACCCTAAAA CATTTCCCTC
  W
  TCACTTGTAA AGCTAACGTG TAGAATTTGA GGACATCTAT AGTGGTACTC AGCTGAGAGG
  TAATGCAGCC TTGGCCAGCC AGCATTTACT GTAGACTGGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38120045	NES09270625	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27985715					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120045	NES09270625	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72235991 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr62486	regulatory region 62486	1178 bp distal
Rr62487	regulatory region 62487	within coordinates
Tssr18342	transcription start site region 18342	383 bp downstream
Tssr18343	transcription start site region 18343	300 bp downstream
Tssr18344	transcription start site region 18344	51 bp upstream
Tssr18345	transcription start site region 18345	635 bp upstream
Tssr18346	transcription start site region 18346	998 bp upstream