rs27985717 SNP Detail

Summary

• ID
  rs27985717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72235858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGAAACC TGACTCATAT
  AAACAGGACC CATAGAATTC TCACACCTTC TGTAAAAAAA AATACTACAA AGCTTTAGTT
  AATTTTATAA GAGATGCCTA TTCGCTACAT GAAGAATTTC TAATGATGCT AGTGTAGACG
  GTCTAATTCA CTTCTCAGAT CAGTTTTTGA AATGGCCAAT TATCAGTGTT AGATTTTGTT
  Y
  CAGTGTCCTG ACTTGCAAAA GAACACAATT CAGAAGTTAA AGAAATCCTG AAACATGTAA
  AGTTCAGAAT GAGAATTAGA GCTACAGGTT GTGGTGATGA ATGTCAGTCG GACACCCTAA
  AACATTTCCC TCTTCACTTG TAAAGCTAAC GTGTAGAATT TGAGGACATC TATAGTGGTA
  CTCAGCTGAG AGGTAATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120047	NES09270623	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985717					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120047	NES09270623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72235858 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr62486	regulatory region 62486	1045 bp distal
Rr62487	regulatory region 62487	within coordinates
Tssr18342	transcription start site region 18342	250 bp downstream
Tssr18343	transcription start site region 18343	167 bp downstream
Tssr18344	transcription start site region 18344	184 bp upstream
Tssr18345	transcription start site region 18345	768 bp upstream
Tssr18346	transcription start site region 18346	1131 bp upstream