rs27985720 SNP Detail

Summary

• ID
  rs27985720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72235584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAGTTA CTGGGCTCTA
  TACCCAGCCT AGGTTGAGCA CCACCCCAGC ACATCCCTCC CATCTCCTAA CTGCTGCCTT
  CTTCTCTACC AACATTGCAG TCATGTTCAC AACTCAGTAC TGTCATGAAG AAATCACAGG
  TCTTAGCACA GAGCACAGTG AGCCCCAGGG AAGAGCTTCC AACCGCTCTG TCTAGAACCA
  Y
  GGAATACGCC ACTGGGCGCT TTACTTCTGC TCAAATCAAG TGTTCGTCTA GTGGCATTAA
  AATGTGCAAA CATACCTGAA ACCTGACTCA TATAAACAGG ACCCATAGAA TTCTCACACC
  TTCTGTAAAA AAAAATACTA CAAAGCTTTA GTTAATTTTA TAAGAGATGC CTATTCGCTA
  CATGAAGAAT TTCTAATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120050	NES09270620	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985720					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120050	NES09270620	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72235584 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr50274	regulatory region 50274	1984 bp distal
Rr62486	regulatory region 62486	771 bp distal
Rr62487	regulatory region 62487	218 bp proximal
Tssr18342	transcription start site region 18342	12 bp upstream
Tssr18343	transcription start site region 18343	98 bp upstream
Tssr18344	transcription start site region 18344	458 bp upstream
Tssr18345	transcription start site region 18345	1042 bp upstream
Tssr18346	transcription start site region 18346	1405 bp upstream