rs27985722 SNP Detail

Summary

• ID
  rs27985722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72234909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATGCCA GATCCACATG
  TGCTGGGTGT TTACAGACAG GTAAAGGCTG CCTAAGAAGT CAGGGTTCCC CCTCACCCCC
  ATCCTGCTGG AATCCTCTGC ACATGTGTAC TCTAGACATG CAGCCAGGCT GCTCAAACAG
  AAAATCTTGA AGGGAGCAGA AGGCATGCCT AGCGACTCTT CATTTTCCAG CGTGCTGTGA
  R
  CATGCGAAGG ACACAGTGGG AGTCAGTGGG TTCAGGAGCC TCCTGCACAA CTGCCCAGGC
  CAGAAGAAAG CCTCCTGTTC AACAAGCCTT TGCTGGGACC CAGTGTGAAC CAAATTCTAG
  AGAACAGCTA GGTGAAAACC TTTCCACTCC TAGAGCATGC ACGCTACTGA GCATCACAGA
  ATGGCAGGAT TCACTACGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120052	NES09270616	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985722					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120052	NES09270616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72234909 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr50274	regulatory region 50274	1309 bp distal
Rr62486	regulatory region 62486	96 bp distal
Rr62487	regulatory region 62487	893 bp proximal
Tssr18342	transcription start site region 18342	687 bp upstream
Tssr18343	transcription start site region 18343	773 bp upstream
Tssr18344	transcription start site region 18344	1133 bp upstream
Tssr18345	transcription start site region 18345	1717 bp upstream