rs27985727 SNP Detail

Summary

• ID
  rs27985727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72233856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACTAGAT TTTAATCTAT
  GTATAAGAAA AAAACCACTC TAAATAGGAA AGATAAATTA TCCTTCTTAG ACACAAGTGC
  ATCCTGAAGG GGTCTTTTTG TTGCGTGTAG CCTCCCGGAA CACACCCAGT TTCTTTTCTT
  TTTACTGTCC TCTGTTATGC TGGTTAGAGA AATAGATTCA GGTAACACTT AGTGTGAAGG
  Y
  CAGGCTTCCC AGAGACACTC TAAGAAGGCT AGCACTAGCA GCCAAAATGT ATTTAAACTA
  TAAACGCATA TAAAATTACT AGATAAAGTT AAAACAAAAG TTTTTATCAA TCTAACTCAG
  AAATTGGTAT CATTCATTTG ACAATGTAAG TTAAATATTT TTGGTGGGCT TTTTTTATAT
  AGAAGCTGTA ACATGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120057	NES09270719	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985727					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120057	NES09270719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72233856 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr50274	regulatory region 50274	256 bp distal
Rr62486	regulatory region 62486	345 bp proximal
Rr62487	regulatory region 62487	1946 bp proximal
Rr367212	regulatory region 367212	1914 bp downstream
Tssr18342	transcription start site region 18342	1740 bp upstream
Tssr18343	transcription start site region 18343	1826 bp upstream