rs27985728 SNP Detail

Summary

• ID
  rs27985728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72233804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGCAAT AACAACACTC
  TGTTTCTTTG TTTTCCAGAG GTGCATAATA ACACTACTAG ATTTTAATCT ATGTATAAGA
  AAAAAACCAC TCTAAATAGG AAAGATAAAT TATCCTTCTT AGACACAAGT GCATCCTGAA
  GGGGTCTTTT TGTTGCGTGT AGCCTCCCGG AACACACCCA GTTTCTTTTC TTTTTACTGT
  Y
  CTCTGTTATG CTGGTTAGAG AAATAGATTC AGGTAACACT TAGTGTGAAG GCCAGGCTTC
  CCAGAGACAC TCTAAGAAGG CTAGCACTAG CAGCCAAAAT GTATTTAAAC TATAAACGCA
  TATAAAATTA CTAGATAAAG TTAAAACAAA AGTTTTTATC AATCTAACTC AGAAATTGGT
  ATCATTCATT TGACAATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120058	NES09270718	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985728					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120058	NES09270718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72233804 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr50274	regulatory region 50274	204 bp distal
Rr62486	regulatory region 62486	397 bp proximal
Rr62487	regulatory region 62487	1998 bp proximal
Rr367212	regulatory region 367212	1862 bp downstream
Tssr18342	transcription start site region 18342	1792 bp upstream
Tssr18343	transcription start site region 18343	1878 bp upstream