rs27985770 SNP Detail

Summary

• ID
  rs27985770
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72222760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGATGACTG CAGTTAGTTC
  CCAGCACCCA CAACAGGAGG CTCAGTAAAC ACTGGCTCTC CAGCTCCGGG CCATGCATTG
  CCTTCTTTTG GCGGCTTTGA GACCCCATCC ACATGCATGC ATGAGCAAGT AGACACACGC
  ATCAGATACA CATAAAAACA AATCTCTTCA AAATAATAAT AAATTCTGCC TCTGGCTTCA
  W
  CCCACAGCCC ATGTGCCATA AAACGTCAGG AAAACTATAT GTTCTTCTGA GAGAATGAGG
  ATGGAAAAGC TAGCTCTGTC ATGCTGCCAT CTGGCATGGT GCCATCTGGC ATGGTGCGAT
  CTTGAAAACC AGTTGGGTCT CAAGAATCCT CTGAGCAGCT CTCCCGGGTC CCTGACCATG
  CTGCAACTCC TACCTTCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38120103	NES09270950	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27985770					SNP	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120103	NES09270950	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72222760 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558965	regulatory region 558965			1585 bp distal
Rr558967	regulatory region 558967			979 bp distal
Rr558968	regulatory region 558968			1 bp proximal
Tssr18339	transcription start site region 18339			1677 bp downstream
Tssr18340	transcription start site region 18340			1661 bp downstream
Tssr18341	transcription start site region 18341			1644 bp downstream