rs27985772 SNP Detail

Summary

• ID
  rs27985772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72222063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAACTGTC ACTCAGTTAT
  AACTCTCTTC CCTAGAGTGG TAGACTGAAG CTTCTCTGCT ATTTTGTGTC TAGGACTCCA
  GTTCACTTTC AGTGTGTTTA TGTGTAGGGT GGGTTTATAT TCATGTGTGT GTGCATGGGG
  GTGTTGTATG CACACATGTG TATGCAAGTA TACACACGTG TATACAGAAA CAGAGAGGCC
  Y
  TGAGTTTATA TTCATGTGTG TGTATATGCA GGTGTTCTAT GCACATGTGT ATGCAGGTGA
  ACACATGTGT GTGCAGAAAG AGAGGGAGGA CCTTCTCTAC CACAGTCTTG TTCCTTGAAC
  CACTAGGTAG GCTAGGGCTG GCCAGTCCCA GTGACCCTCA TGTCTCGGCC TGGCACAGAC
  AGTGCTGTGA CTCTATGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38120105	NES09270991	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T		C	T	C		T
ss320342262	CHEV_2_72229776	CHEVERUD	SCREENING_POP	f	SNP						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27985772					SNP	T	T	T	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120105	NES09270991	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72222063 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	888 bp distal
Rr558966	regulatory region 558966	1529 bp distal
Rr558967	regulatory region 558967	282 bp distal
Rr558968	regulatory region 558968	698 bp proximal
Tssr18338	transcription start site region 18338	1314 bp downstream
Tssr18339	transcription start site region 18339	980 bp downstream
Tssr18340	transcription start site region 18340	964 bp downstream
Tssr18341	transcription start site region 18341	947 bp downstream