rs27985773 SNP Detail

Summary

• ID
  rs27985773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72221842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACCTGA ATGCATAATA
  CAAGGTTTCC CTAAGGAAAT GCTATTTGAT CTGTTATCCA AAGGATTAGA GGGATTTAAA
  AACTGTGAGT ATCAGTGTGT TAGAGGTAGG GTTCTGAAAG TGTGCCAACA AAGAAAACAA
  TGCAAAGTGA CTAAATTCTC TGAAAAAAAA AATGAAATTT CCCATAGCCC AAACCAATAT
  Y
  CATCCTAAAT AAGTTTACCA GAGAACTGTC ACTCAGTTAT AACTCTCTTC CCTAGAGTGG
  TAGACTGAAG CTTCTCTGCT ATTTTGTGTC TAGGACTCCA GTTCACTTTC AGTGTGTTTA
  TGTGTAGGGT GGGTTTATAT TCATGTGTGT GTGCATGGGG GTGTTGTATG CACACATGTG
  TATGCAAGTA TACACACGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38120106	NES09270990	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27985773					SNP	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120106	NES09270990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72221842 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	667 bp distal
Rr558966	regulatory region 558966	1308 bp distal
Rr558967	regulatory region 558967	61 bp distal
Rr558968	regulatory region 558968	919 bp proximal
Tssr18338	transcription start site region 18338	1093 bp downstream
Tssr18339	transcription start site region 18339	759 bp downstream
Tssr18340	transcription start site region 18340	743 bp downstream
Tssr18341	transcription start site region 18341	726 bp downstream