rs27985775 SNP Detail

Summary

• ID
  rs27985775
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72221470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGGGAG GGAGGGAGGG
  AGGGAGGGAG GGAGGGAGGG AGAGAAGGAA GGAGGAAGGC AGGAAGCTGG GTGGCAGGCA
  ATCAGAGAGC ATGACTGTAG TGATGTAAAC ACTACTCTTG CCCTGGAAGA TAAATATGTA
  CCCAGTGCAT TTGCCTAGCC ATTGTGCTTC ATGTCAGATT CTTTAAACCT CCCCGGCCAA
  W
  GCTCCTGTAG TGATTAGTAC CATGTCCCCA GACATACAGC ACTGTCGGCA GCAGCCTCAA
  AAACACCTGT GTCAAAATGC TAAATATGAG AGTACAACCA TCCACATTCC GCCCTGACAA
  GCCACGTGAC AGAGAAGGCA TGGCTAACAG AGCACTAGCA ATGAAATCTG ATCTGACCTG
  AATGCATAAT ACAAGGTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120108	NES09270988	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985775					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120108	NES09270988	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72221470 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	295 bp distal
Rr558966	regulatory region 558966	936 bp distal
Rr558967	regulatory region 558967	within coordinates
Rr558968	regulatory region 558968	1291 bp proximal
Tssr18338	transcription start site region 18338	721 bp downstream
Tssr18339	transcription start site region 18339	387 bp downstream
Tssr18340	transcription start site region 18340	371 bp downstream
Tssr18341	transcription start site region 18341	354 bp downstream