rs27985779 SNP Detail

Summary

• ID
  rs27985779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72220870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATGATT TTTTTCTTAG
  AAATATAAAA TTAATGCAGT GAGCTCCCAT CTAGATCGGA GGGCTTTTTT TTTTTTCTGG
  TCTAAAATAA CTTAACAAAA GCTTGGTATG ACATTGTTTC CCACAGTAAC ATGTAATCAG
  ACCACTTCCC CTCAAGCTCC ATATGTGTGC CTCATTGCTC TTCAGACAAA GGCAGAAATA
  Y
  GTATGATTTG GAAGACCCAC CATCCAGCCT TGTCTTGAGC ATGCCCTAAG CTTTCAATCC
  CTCCACAGAG GCCCAGGTCT CCCTCACCAG AGCCTCTCAG TGCAGTCTCC TTTTTATAGA
  CACCCTGTTT CAGTTGCACA TTCCTCCTGT CCCTCCTCCC CCCCAGCTCC CATTAGCCGC
  CCGGGCAGCT GGTGACCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss38120112	NES09271023	PERLEGEN	MM_PANEL2	f	SNP	C	C	T		T	C
ss320342256	CHEV_2_72228583	CHEVERUD	SCREENING_POP	f	SNP				T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs27985779					SNP	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120112	NES09271023	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72220870 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	within coordinates
Rr558966	regulatory region 558966	336 bp distal
Rr558967	regulatory region 558967	433 bp proximal
Rr558968	regulatory region 558968	1891 bp proximal
Tssr18338	transcription start site region 18338	121 bp downstream
Tssr18339	transcription start site region 18339	193 bp upstream
Tssr18340	transcription start site region 18340	215 bp upstream
Tssr18341	transcription start site region 18341	230 bp upstream