rs27985781 SNP Detail

Summary

• ID
  rs27985781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72220499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACATTAT AAACTCCAGC
  GAAACAAATG AGTAAAGAGA GAATCGGATT GTGTGAGTGG AAAAACAACC CAAGATGAAA
  CAGTTGGACC AGGTCGAATG ACGCAGGGAA TATAAATAGC ATGTTTGGGA GCTGGACACT
  GTTCCTCCCC TGACTCAGCG GAGATTTGAA GTAACTTCAT CCTTGCTCCG ATATCCATGG
  Y
  AGGAACGTGA TGCCCTACGC CATCTGCTGG TGATAAGGCA GTACTGCATG CACTGGCTCT
  TGCCACCTGT CAGTACACTT GACTGAGGGC CTTCTAGTTG ACTGATATTT TTACTGTGAC
  CTTATTTATT TATTTTCATT CCTTTGAAAC AGCTTTCTCG GGCCATTAAC TTTCATGATT
  TTTTTCTTAG AAATATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120114	NES09271021	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985781					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120114	NES09271021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72220499 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr558965	regulatory region 558965			within coordinates
Rr558966	regulatory region 558966			14 bp proximal
Rr558967	regulatory region 558967			804 bp proximal
Tssr18338	transcription start site region 18338			246 bp upstream
Tssr18339	transcription start site region 18339			564 bp upstream
Tssr18340	transcription start site region 18340			586 bp upstream
Tssr18341	transcription start site region 18341			601 bp upstream