rs27985787 SNP Detail

Summary

• ID
  rs27985787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72219151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTAGTTT TACATTTCTG
  AAATATGGGG AAAGAGCTTT TCTTAATGAT GTCAGAAGCG CCAGGTCCTG AGAGCAAGCC
  ACCTCAACAT TGTTCCTTCC TGTTTTTGTG CTCCTAAATT AAAATGCGTG TTTTAATTGC
  TGTAGCTGTA ATTTGTTCTG AAATGCTGTA ATTATGAGGC ACGGTGAGGA GAGCACGTGC
  R
  CCATCCTTTT ATTATCGGTC TCCATTTTTG TTTTAACCTT TTGTCTGAGC CTTGGCTGGA
  GAGGAAGGAG GTGAGCGCAG ACAGGGCCTG CTGGAGACAC ACTGGGCGAG CTTGTTCAGG
  GACTGCCTTC AGAGCCACGG GATAAACCTT GAGAACAATG ACGTCATTCT GTCTTTAAAT
  GTTTTGTTGT TGTTATTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38120120	NES09271015	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27985787					SNP	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120120	NES09271015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72219151 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	1074 bp proximal
Rr558966	regulatory region 558966	1362 bp proximal
Tssr18338	transcription start site region 18338	1594 bp upstream
Tssr18339	transcription start site region 18339	1912 bp upstream
Tssr18340	transcription start site region 18340	1934 bp upstream
Tssr18341	transcription start site region 18341	1949 bp upstream