rs27985788 SNP Detail

Summary

• ID
  rs27985788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72218846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTAAAA TAAAGATTCT
  GCATTTCCTG TATTTATTTT ATAGTCATTT CTTGTGCAAA GTTACACCTT TTTTTTTTTT
  TTCATTTAAA ACCTGACACA TGGTGGGAGG CATGAAGATC TAAACAAAGT TTAAAAATAT
  AAATTTGTTT ATATGTACTC TATTTAAACT ATTTAAAGCT TTTTCCTTTG TTCACCAGTA
  R
  CATTTAACTA TGCTTTCTTA CACACACACA CACACACACA CCATATGTGT ATACACACAT
  ATGTATGCCC TCGAAATAAA TAAAGACAGA AGAAGTCAAT AAATATCCTA GTTTTACATT
  TCTGAAATAT GGGGAAAGAG CTTTTCTTAA TGATGTCAGA AGCGCCAGGT CCTGAGAGCA
  AGCCACCTCA ACATTGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss38120121	NES09271014	PERLEGEN	MM_PANEL2	f	SNP	G	A		A	G	A
ss320342245	CHEV_2_72226559	CHEVERUD	SCREENING_POP	f	SNP			G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27985788					SNP	G	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120121	NES09271014	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72218846 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	1379 bp proximal
Rr558966	regulatory region 558966	1667 bp proximal
Tssr18338	transcription start site region 18338	1899 bp upstream