rs27985893 SNP Detail

Summary

• ID
  rs27985893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72198438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATCAGAG TAAATTTGGC
  ATTTTATTCT TCTGAGAAGA AAAAATGTTT TGTAAGTATT GCACATCTAT TAGAGGATCG
  CAATGCCTTT GCTCATCAGT GGACCAGCTG CACACCACAC AGTTCTGTCC TCTCCCAGGC
  CCGGCGGAAA AGTGACAGTG CTGCAGCTAG CTCAGTGGCC ACAGATATCC AAGTTGAGCA
  Y
  CACAGAGCCT AAGCCTGGGC GGACAGCACA TGCACTTGGT AGTGGATGCT CAGGGGCCAT
  TATGGTCAAT CTGTGCTCTG TGCATGAGTT TGAGAAAATC ACGGTGTCCT TGTTAGCTAC
  TGTAAGAAGT GAGGTCCTGT ATCAGCTTAG CTAAAGATAT TGTTACTAAT GTAGACATAT
  GCGATTTTTC TTTTATCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120226	NES09271483	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985893					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120226	NES09271483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72198438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			1726 bp distal
Rr558962	regulatory region 558962			1219 bp distal
Rr558963	regulatory region 558963			996 bp proximal