rs27985894 SNP Detail

Summary

• ID
  rs27985894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72198394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGATGCAC CCAGTAGATA
  GAGTACATTA ACTCATATCA TACATTTATC AGAGTAAATT TGGCATTTTA TTCTTCTGAG
  AAGAAAAAAT GTTTTGTAAG TATTGCACAT CTATTAGAGG ATCGCAATGC CTTTGCTCAT
  CAGTGGACCA GCTGCACACC ACACAGTTCT GTCCTCTCCC AGGCCCGGCG GAAAAGTGAC
  R
  GTGCTGCAGC TAGCTCAGTG GCCACAGATA TCCAAGTTGA GCACCACAGA GCCTAAGCCT
  GGGCGGACAG CACATGCACT TGGTAGTGGA TGCTCAGGGG CCATTATGGT CAATCTGTGC
  TCTGTGCATG AGTTTGAGAA AATCACGGTG TCCTTGTTAG CTACTGTAAG AAGTGAGGTC
  CTGTATCAGC TTAGCTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120227	NES09271482	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985894					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120227	NES09271482	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72198394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			1682 bp distal
Rr558962	regulatory region 558962			1175 bp distal
Rr558963	regulatory region 558963			1040 bp proximal