rs27985899 SNP Detail

Summary

• ID
  rs27985899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72197729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATCTAG TCTTGCTTCA
  AGTCATAGTC AAATAGACCA TACCTGAAAA TTATTTGGAA ATTTGAGTTT AAAGCAAGGA
  AGACATAACT ATGAAATTCA GTCACGTAGA CTACTAAGTA CCATGTAAGC AGCAGCCATT
  GAGCTGCACA GCTTGAATAT GGAGAACTTG CTATTAAATG AGACCCTTTA TCCCAGTTAC
  R
  TCACTTAAGG TCATTTAAGT TGCTACTACT TCTGTTAACT TGACTCTCTT CAGTGATATC
  ATTAAGTAAC AAGAGTTAAA ACCTTTTTGT TATTTTCTTT GTTCTTTTGA TTCCTCAATA
  TATAATAACC AGAGTAGTTG AGGGAGAGTT GCTATTAATA AATTCTCCTC ATAAAATTGT
  AGTGTTCTAT GTACTTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38120232	NES09271477	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	A	A	A		G
ss320342103	CHEV_2_72205442	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27985899					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120232	NES09271477	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72197729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			1017 bp distal
Rr558962	regulatory region 558962			510 bp distal
Rr558963	regulatory region 558963			1705 bp proximal