rs27985903 SNP Detail

Summary

• ID
  rs27985903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72197429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGGTCAG ATATTAATAA
  TTCACAAATA CTTGAAGCAG GAGAGAGCAT TTTTCAATTC TTCTCGGTGG TTTGAAATAA
  AAACAAAGCA GAAGACTCCA TAAAAAACAG ATTGAATGGA ATTTTGTGAT TACAGCACGT
  AGATGCACAT CAAGTTTTCA GAGCTGGGTA CAACTCACCG CGCACCATTA ATTTATAGTA
  Y
  TTTTGCTTCT GATAATTTGA CTCAGAGTCA GGCAGTGTCT ACATTGTAAG GTTTTATCGT
  CGAATATTCC CTTTTGAAAT CTTTGTCAGC AAGTACAAAA ACCATCTAGT CTTGCTTCAA
  GTCATAGTCA AATAGACCAT ACCTGAAAAT TATTTGGAAA TTTGAGTTTA AAGCAAGGAA
  GACATAACTA TGAAATTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38120236	NES09271473	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27985903					SNP	C	C	C	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120236	NES09271473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72197429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			717 bp distal
Rr558962	regulatory region 558962			210 bp distal