ACTCATGCGT TTGGAAATAG GTATTGCTCA ACGTCTTTGC TGTTGAGAGC TGCCCTCAAA GCTGCAAGGA TCCTCTTCCT GATGAGGAGG GGGAGGAGGG AAGCAAGAAC TTCTGCAATT GTATACAGCA GACAATTAAA GCAGGCCAGC TTGAGTCCCA CCTCAGTCCA AAGCTCTCCC AAACCTCCAC AGTGGGACTG R TCAGATATTA ATAATTCACA AATACTTGAA GCAGGAGAGA GCATTTTTCA ATTCTTCTCG GTGGTTTGAA ATAAAAACAA AGCAGAAGAC TCCATAAAAA ACAGATTGAA TGGAATTTTG TGATTACAGC ACGTAGATGC ACATCAAGTT TTCAGAGCTG GGTACAACTC ACCGCGCACC ATTAATTTAT AGTACTTTTG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38120239 | NES09271470 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | G | G | G | G | A | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27985906 | SNP | G | G | G | G | G | G | A | G | G | G | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38120239 | NES09271470 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:72197234 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Map3k20 | mitogen-activated protein kinase kinase kinase 20 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr558961 | regulatory region 558961 | 522 bp distal | ||||||
Rr558962 | regulatory region 558962 | 15 bp distal | ||||||
Tssr18337 | transcription start site region 18337 | 1874 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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